Repository: https://pub.amphibase.org/draft/Anura/Bombina_bombina/

2021_07 release: 14,061 sequences

Transcripts

  • Mean Tx length(bp): 2,206
  • Median Tx length(bp): 1,776
  • Tx longer than 400bp: 13,074 (92.981)
  • Tx longer than 1kbp: 10,143 (72.136)
  • Tx longer than 5kbp: 1,026
  • Tx longer than 10kbp: 68

Peptides

  • Mean pep length(aa): 452
  • Median pep length(aa): 339
  • Peptides longer than 100aa: 13,417 (95.420)
  • Peptides longer than 500aa: 4,286 (30.481)
  • Peptides longer than 1000aa: 1,114
  • Peptides longer than 3000aa: 38

BUSCO

  • Vertebrates: C:72.4%[S:70.9%,D:1.5%],F:11.7%,M:15.9%,n:3354
    • 2427 Complete BUSCOs (C)

    • 2377 Complete and single-copy BUSCOs (S)

    • 50 Complete and duplicated BUSCOs (D)

    • 394 Fragmented BUSCOs (F)

    • 533 Missing BUSCOs (M)

    • 3354 Total BUSCO groups searched

External Links