Repository: https://pub.amphibase.org/draft/Anura/Hyla_arborea/

2021_07 release: 15,709 sequences

Transcripts

  • Mean Tx length(bp): 1,132
  • Median Tx length(bp): 857
  • Tx longer than 400bp: 12,273 (78.127)
  • Tx longer than 1kbp: 6,750 (42.969)
  • Tx longer than 5kbp: 131
  • Tx longer than 10kbp: 7

Peptides

  • Mean peptide length(aa):
  • Mean pep length(aa): 290
  • Median pep length(aa): 218
  • Peptides longer than 100aa: 12,943 (82.392)
  • Peptides longer than 500aa: 2,225 (14.164)
  • Peptides longer than 1000aa: 348
  • Peptides longer than 3000aa: 2

BUSCO

  • Vertebrates: C:43.2%[S:41.1%,D:2.1%],F:22.7%,M:34.1%,n:3354
    • 1449 Complete BUSCOs (C)
    • 1377 Complete and single-copy BUSCOs (S)
    • 72 Complete and duplicated BUSCOs (D)
    • 762 Fragmented BUSCOs (F)
    • 1143 Missing BUSCOs (M)
    • 3354 Total BUSCO groups searched

External Links