Repository: https://pub.amphibase.org/draft/Anura/Hyla_cinerea/

2021_07 release: 25,257 sequences

Transcripts

  • Mean Tx length(bp): 1,697
  • Median Tx length(bp): 1,123
  • Tx longer than 400bp: 20,295 (80.354)
  • Tx longer than 1kbp: 13,510 (53.490)
  • Tx longer than 5kbp: 1,270
  • Tx longer than 10kbp: 134

Peptides

  • Mean peptide length(aa):
  • Mean pep length(aa): 390
  • Median pep length(aa): 246
  • Peptides longer than 100aa: 20,652 (81.767)
  • Peptides longer than 500aa: 6,086 (24.096)
  • Peptides longer than 1000aa: 1,801
  • Peptides longer than 3000aa: 96

BUSCO

  • Vertebrates: C:83.7%[S:80.1%,D:3.6%],F:7.0%,M:9.3%,n:3354
    • 2809 Complete BUSCOs (C)
    • 2688 Complete and single-copy BUSCOs (S)
    • 121 Complete and duplicated BUSCOs (D)
    • 236 Fragmented BUSCOs (F)
    • 309 Missing BUSCOs (M)
    • 3354 Total BUSCO groups searched

External Links