Repository: https://pub.amphibase.org/draft/Anura/Hymenochirus_boettgeri/

2021_07 release: 18,782 sequences

Transcripts

  • Mean Tx length(bp): 1,368
  • Median Tx length(bp): 1,034
  • Tx longer than 400bp: 14,987 (79.794)
  • Tx longer than 1kbp: 9,656 (51.411)
  • Tx longer than 5kbp: 347
  • Tx longer than 10kbp: 12

Peptides

  • Mean peptide length(aa): 313
  • Median peptide length(aa): 244
  • Peptides longer than 100aa: 15,630 (83.218)
  • Peptides longer than 500aa: 3,130 (16.665)
  • Peptides longer than 1000aa: 472
  • Peptides longer than 3000aa: 3

BUSCO

  • Vertebrates: C:65.6%[S:62.7%,D:2.9%],F:17.7%,M:16.7%,n:3354
    • 2200 Complete BUSCOs (C)
    • 2102 Complete and single-copy BUSCOs (S)
    • 98 Complete and duplicated BUSCOs (D)
    • 595 Fragmented BUSCOs (F)
    • 559 Missing BUSCOs (M)
    • 3354 Total BUSCO groups searched

External Links