Repository: https://pub.amphibase.org/draft/Anura/Oophaga_pumilio/

2021_07 release: 18,818 sequences

Transcripts

  • Mean Tx length(bp): 1,536
  • Median Tx length(bp): 1,144
  • Tx longer than 400bp: 15,119 (80.343)
  • Tx longer than 1kbp: 10,348 (54.990)
  • Tx longer than 5kbp: 556
  • Tx longer than 10kbp: 27

Peptides

  • Mean peptide length(aa): 327
  • Median peptide length(aa): 240
  • Peptides longer than 100aa: 15,290 (81.252)
  • Peptides longer than 500aa: 3,442 (18.291)
  • Peptides longer than 1000aa: 656
  • Peptides longer than 3000aa: 17

BUSCO

  • Vertebrates: C:59.8%[S:58.7%,D:1.1%],F:21.4%,M:18.8%,n:3354
    • 2008 Complete BUSCOs (C)

    • 1970 Complete and single-copy BUSCOs (S)

    • 38 Complete and duplicated BUSCOs (D)

    • 717 Fragmented BUSCOs (F)

    • 629 Missing BUSCOs (M)

    • 3354 Total BUSCO groups searched

External Links