Repository: https://pub.amphibase.org/draft/Anura/Pelophylax_nigromaculatus/

2021_07 release: 19,273 sequences

Transcripts

  • Mean Tx length(bp): 1,517
  • Median Tx length(bp): 1,112
  • Tx longer than 400bp: 15,315 (79.463)
  • Tx longer than 1kbp: 10,317 (53.531)
  • Tx longer than 5kbp: 639
  • Tx longer than 10kbp: 31

Peptides

  • Mean pep length(aa): 361
  • Median pep length(aa): 257
  • Peptides longer than 100aa: 15,813 (82.047)
  • Peptides longer than 500aa: 4,309 (22.358)
  • Peptides longer than 1000aa: 995
  • Peptides longer than 3000aa: 21

BUSCO

  • Vertebrates: C:70.5%[S:67.3%,D:3.2%],F:9.7%,M:19.8%,n:3354
    • 2366 Complete BUSCOs (C)
    • 2258 Complete and single-copy BUSCOs (S)
    • 108 Complete and duplicated BUSCOs (D)
    • 324 Fragmented BUSCOs (F)
    • 664 Missing BUSCOs (M)
    • 3354 Total BUSCO groups searched

External Links