Repository: https://pub.amphibase.org/draft/Anura/Rana_catesbeiana/

2021_07 release: 24,078 sequences

Transcripts

  • Mean Tx length(bp): 1,631
  • Median Tx length(bp): 1,060
  • Tx longer than 400bp: 19,321 (80.243)
  • Tx longer than 1kbp: 12,489 (51.869)
  • Tx longer than 5kbp: 1,100
  • Tx longer than 10kbp: 58

Peptides

  • Mean peptide length(aa): 305
  • Median peptide length(aa): 193
  • Peptides longer than 100aa: 17,075 (70.915)
  • Peptides longer than 500aa: 4,344 (18.041)
  • Peptides longer than 1000aa: 1,036
  • Peptides longer than 3000aa: 20

BUSCO

  • Vertebrates: C:74.0%[S:70.8%,D:3.2%],F:10.6%,M:15.4%,n:3354
    • 2479 Complete BUSCOs (C)
    • 2373 Complete and single-copy BUSCOs (S)
    • 106 Complete and duplicated BUSCOs (D)
    • 357 Fragmented BUSCOs (F)
    • 518 Missing BUSCOs (M)
    • 3354 Total BUSCO groups searched

External Links