Repository: https://pub.amphibase.org/draft/Anura/Rana_sylvatica/

2021_07 release: 22,685 sequences

Transcripts

  • Mean Tx length(bp): 1,533
  • Median Tx length(bp): 998
  • Tx longer than 400bp: 17,707 (78.056)
  • Tx longer than 1kbp: 11,326 (49.927)
  • Tx longer than 5kbp: 888
  • Tx longer than 10kbp: 39

Peptides

  • Mean peptide length(aa): 299
  • Median peptide length(aa): 189
  • Peptides longer than 100aa: 16,014 (70.593)
  • Peptides longer than 500aa: 3,957 (17.443)
  • Peptides longer than 1000aa: 894
  • Peptides longer than 3000aa: 12

BUSCO

  • Vertebrates: C:69.0%[S:65.9%,D:3.1%],F:13.1%,M:17.9%,n:3354
    • 2314 Complete BUSCOs (C)
    • 2209 Complete and single-copy BUSCOs (S)
    • 105 Complete and duplicated BUSCOs (D)
    • 438 Fragmented BUSCOs (F)
    • 602 Missing BUSCOs (M)
    • 3354 Total BUSCO groups searched

External Links