Repository: https://pub.amphibase.org/draft/Anura/Ranitomeya_imitator/

2021_07 release: 19,628 sequences

Transcripts

  • Mean Tx length(bp): 2,320
  • Median Tx length(bp): 1,813
  • Tx longer than 400bp: 16,808 (85.633)
  • Tx longer than 1kbp: 13,736 (69.982)
  • Tx longer than 5kbp: 1,918
  • Tx longer than 10kbp: 147

Peptides

  • Mean pep length(aa): 444
  • Median pep length(aa): 329
  • Peptides longer than 100aa: 16,754 (85.358)
  • Peptides longer than 500aa: 5,958 (30.355)
  • Peptides longer than 1000aa: 1,637
  • Peptides longer than 3000aa: 60

BUSCO

  • Vertebrates: C:83.4%[S:81.9%,D:1.5%],F:7.8%,M:8.8%,n:3354
    • 2798 Complete BUSCOs (C)
    • 2747 Complete and single-copy BUSCOs (S)
    • 51 Complete and duplicated BUSCOs (D)
    • 261 Fragmented BUSCOs (F)
    • 295 Missing BUSCOs (M)
    • 3354 Total BUSCO groups searched

External Links