Repository: https://pub.amphibase.org/draft/Anura/Xenopus_andrei/

2021_07 release: 19,345 sequences

Transcripts

  • Mean Tx length(bp): 1,959
  • Median Tx length(bp): 1,609
  • Tx longer than 400bp: 19,271 (99.617)
  • Tx longer than 1kbp: 13,743 (71.042)
  • Tx longer than 5kbp: 782
  • Tx longer than 10kbp: 43

Peptides

  • Mean peptide length(aa): 469
  • Median peptide length(aa): 355
  • Peptides longer than 100aa: 18,618 (96.242)
  • Peptides longer than 500aa: 6,343 (32.789)
  • Peptides longer than 1000aa: 1,594
  • Peptides longer than 3000aa: 43

BUSCO

  • Vertebrates: C:88.6%[S:84.4%,D:4.2%],F:4.9%,M:6.5%,n:3354
    • 2972 Complete BUSCOs (C)
    • 2831 Complete and single-copy BUSCOs (S)
    • 141 Complete and duplicated BUSCOs (D)
    • 163 Fragmented BUSCOs (F)
    • 219 Missing BUSCOs (M)
    • 3354 Total BUSCO groups searched

External Links