Repository: https://pub.amphibase.org/draft/Caudata/Ambystoma_mexicanum/

2021_07 release: 27,889 sequences

Transcripts

  • Mean Tx length(bp): 2,623
  • Median Tx length(bp): 2,057
  • Tx longer than 400bp: 24,248 (86.914)
  • Tx longer than 1kbp: 19,420 (69.608)
  • Tx longer than 5kbp: 3,810
  • Tx longer than 10kbp: 379

Peptides

  • Mean peptide length(aa): 452
  • Median peptide length(aa): 322
  • Peptides longer than 100aa: 24,706 (88.555)
  • Peptides longer than 500aa: 8,482 (30.403)
  • Peptides longer than 1000aa: 2,474
  • Peptides longer than 3000aa: 103

BUSCO

  • Vertebrates: C:95.7%[S:92.4%,D:3.3%],F:1.8%,M:2.5%,n:3354
    • 3209 Complete BUSCOs (C)
    • 3099 Complete and single-copy BUSCOs (S)
    • 110 Complete and duplicated BUSCOs (D)
    • 62 Fragmented BUSCOs (F)
    • 83 Missing BUSCOs (M)
    • 3354 Total BUSCO groups searched

External Links