Repository: https://pub.amphibase.org/draft/Caudata/Andrias_davidianus/

2021_07 release: 16l662 sequences

Transcripts

  • Mean Tx length(bp): 2,865
  • Median Tx length(bp): 2,378
  • Tx longer than 400bp: 16,165 (97.017)
  • Tx longer than 1kbp: 14,338 (86.052)
  • Tx longer than 5kbp: 2,035
  • Tx longer than 10kbp: 169

Peptides

  • Mean peptide length(aa): 543
  • Median peptide length(aa): 420
  • Peptides longer than 100aa: 16,140 (96.867)
  • Peptides longer than 500aa: 6,669 (40.025)
  • Peptides longer than 1000aa: 1,907
  • Peptides longer than 3000aa: 74

BUSCO

  • Vertebrates: C:87.9%[S:86.7%,D:1.2%],F:3.2%,M:8.9%,n:3354
    • 2948 Complete BUSCOs (C)
    • 2909 Complete and single-copy BUSCOs (S)
    • 39 Complete and duplicated BUSCOs (D)
    • 107 Fragmented BUSCOs (F)
    • 299 Missing BUSCOs (M)
    • 3354 Total BUSCO groups searched

External Links