Repository: https://pub.amphibase.org/draft/Caudata/Hynobius_leechii/

2021_07 release: 18,272 sequences

Transcripts

  • Mean Tx length(bp): 1,844
  • Median Tx length(bp): 1,353
  • Tx longer than 400bp: 16,427 (89.903)
  • Tx longer than 1kbp: 11,099 (60.743)
  • Tx longer than 5kbp: 964
  • Tx longer than 10kbp: 46

Peptides

  • Mean peptide length(aa): 384
  • Median peptide length(aa): 287
  • Peptides longer than 100aa: 17,457 (95.540)
  • Peptides longer than 500aa: 4,373 (23.933)
  • Peptides longer than 1000aa: 897
  • Peptides longer than 3000aa: 13

BUSCO

  • Vertebrates: C:71.2%[S:68.2%,D:3.0%],F:11.7%,M:17.1%,n:3354
    • 2391 Complete BUSCOs (C)
    • 2289 Complete and single-copy BUSCOs (S)
    • 102 Complete and duplicated BUSCOs (D)
    • 392 Fragmented BUSCOs (F)
    • 571 Missing BUSCOs (M)
    • 3354 Total BUSCO groups searched

External Links