Repository: https://pub.amphibase.org/draft/Caudata/Hynobius_leechii-HC1/

2021_07 release: 23,292 sequences

Transcripts

  • Mean Tx length(bp): 1,886
  • Median Tx length(bp): 1,315
  • Tx longer than 400bp: 20,752 (89.095)
  • Tx longer than 1kbp: 13,776 (59.145)
  • Tx longer than 5kbp: 1,466
  • Tx longer than 10kbp: 107

Peptides

  • Mean peptide length(aa): 390
  • Median peptide length(aa): 279
  • Peptides longer than 100aa: 22,115 (94.947)
  • Peptides longer than 500aa: 5,588 (23.991)
  • Peptides longer than 1000aa: 1,315
  • Peptides longer than 3000aa: 39

BUSCO

  • Vertebrates: C:79.9%[S:76.8%,D:3.1%],F:8.4%,M:11.7%,n:3354
    • 2681 Complete BUSCOs (C)
    • 2577 Complete and single-copy BUSCOs (S)
    • 104 Complete and duplicated BUSCOs (D)
    • 282 Fragmented BUSCOs (F)
    • 391 Missing BUSCOs (M)
    • 3354 Total BUSCO groups searched

External Links