Repository: https://pub.amphibase.org/draft/Caudata/Hynobius_leechii-HC3/

2021_07 release: 15,747 sequences

Transcripts

  • Mean Tx length(bp): 1,545
  • Median Tx length(bp): 1,184
  • Tx longer than 400bp: 14,281 (90.690)
  • Tx longer than 1kbp: 9,001 (57.160)
  • Tx longer than 5kbp: 360
  • Tx longer than 10kbp: 29

Peptides

  • Mean peptide length(aa): 353
  • Median peptide length(aa): 267
  • Peptides longer than 100aa: 14,933 (94.831)
  • Peptides longer than 500aa: 3,103 (19.705)
  • Peptides longer than 1000aa: 519
  • Peptides longer than 3000aa: 14

BUSCO

  • Vertebrates: C:60.8%[S:58.5%,D:2.3%],F:16.4%,M:22.8%,n:3354
    • 2040 Complete BUSCOs (C)
    • 1963 Complete and single-copy BUSCOs (S)
    • 77 Complete and duplicated BUSCOs (D)
    • 551 Fragmented BUSCOs (F)
    • 763 Missing BUSCOs (M)
    • 3354 Total BUSCO groups searched

External Links