Repository: https://pub.amphibase.org/draft/Caudata/Hynobius_retardatus/

2021_07 release: 27,330 sequences

Transcripts

  • Mean Tx length(bp): 1,504
  • Median Tx length(bp): 961
  • Tx longer than 400bp: 19,924 (72.902)
  • Tx longer than 1kbp: 13,338 (48.804)
  • Tx longer than 5kbp: 1,127
  • Tx longer than 10kbp: 93

Peptides

  • Mean peptide length(aa): 330
  • Median peptide length(aa): 219
  • Peptides longer than 100aa: 20,899 (76.469)
  • Peptides longer than 500aa: 5,325 (19.484)
  • Peptides longer than 1000aa: 1,226
  • Peptides longer than 3000aa: 49

BUSCO

  • Vertebrates: C:78.9%[S:75.4%,D:3.5%],F:9.2%,M:11.9%,n:3354
    • 2646 Complete BUSCOs (C)
    • 2529 Complete and single-copy BUSCOs (S)
    • 117 Complete and duplicated BUSCOs (D)
    • 307 Fragmented BUSCOs (F)
    • 401 Missing BUSCOs (M)
    • 3354 Total BUSCO groups searched

External Links