Repository: https://pub.amphibase.org/draft/Caudata/Hynobius_yangi/

2021_07 release: 20,287 sequences

Transcripts

  • Mean Tx length(bp): 1,770
  • Median Tx length(bp): 1,336
  • Tx longer than 400bp: 18,132 (89.377)
  • Tx longer than 1kbp: 12,241 (60.339)
  • Tx longer than 5kbp: 840
  • Tx longer than 10kbp: 51

Peptides

  • Mean peptide length(aa): 379
  • Median peptide length(aa): 282
  • Peptides longer than 100aa: 19,401 (95.633)
  • Peptides longer than 500aa: 4,632 (22.832)
  • Peptides longer than 1000aa: 959
  • Peptides longer than 3000aa: 28

BUSCO

  • Vertebrates: C:73.8%[S:71.0%,D:2.8%],F:10.3%,M:15.9%,n:3354
    • 2476 Complete BUSCOs (C)
    • 2383 Complete and single-copy BUSCOs (S)
    • 93 Complete and duplicated BUSCOs (D)
    • 345 Fragmented BUSCOs (F)
    • 533 Missing BUSCOs (M)
    • 3354 Total BUSCO groups searched

External Links