Repository: https://pub.amphibase.org/draft/Caudata/Lyciasalamandra_atifi/

2021_07 release: 10,149 sequences

Transcripts

  • Mean Tx length(bp): 1,686
  • Median Tx length(bp): 1,270
  • Tx longer than 400bp: 8,799 (86.698)
  • Tx longer than 1kbp: 6,088 (59.986)
  • Tx longer than 5kbp: 398
  • Tx longer than 10kbp: 21

Peptides

  • Mean peptide length(aa): 343
  • Median peptide length(aa): 263
  • Peptides longer than 100aa: 8,935 (88.038)
  • Peptides longer than 500aa: 1,952 (19.233)
  • Peptides longer than 1000aa: 339
  • Peptides longer than 3000aa: 5

BUSCO

  • Vertebrates: C:39.7%[S:37.9%,D:1.8%],F:14.0%,M:46.3%,n:3354
    • 1331 Complete BUSCOs (C)
    • 1271 Complete and single-copy BUSCOs (S)
    • 60 Complete and duplicated BUSCOs (D)
    • 470 Fragmented BUSCOs (F)
    • 1553 Missing BUSCOs (M)
    • 3354 Total BUSCO groups searched

External Links