Repository: https://pub.amphibase.org/draft/Caudata/Paramesotriton_hongkongensis/

2021_07 release: 20,494 sequences

Transcripts

  • Mean Tx length(bp): 1,601
  • Median Tx length(bp): 1,124
  • Tx longer than 400bp: 16,120 (78.657)
  • Tx longer than 1kbp: 11,020 (53.772)
  • Tx longer than 5kbp: 782
  • Tx longer than 10kbp: 13

Peptides

  • Mean peptide length(aa): 330
  • Median peptide length(aa): 241
  • Peptides longer than 100aa: 16,974 (82.824)
  • Peptides longer than 500aa: 3,993 (19.484)
  • Peptides longer than 1000aa: 785
  • Peptides longer than 3000aa: 1

BUSCO

  • Vertebrates: C:63.9%[S:61.0%,D:2.9%],F:16.2%,M:19.9%,n:3354
    • 2142 Complete BUSCOs (C)
    • 2045 Complete and single-copy BUSCOs (S)
    • 97 Complete and duplicated BUSCOs (D)
    • 544 Fragmented BUSCOs (F)
    • 668 Missing BUSCOs (M)
    • 3354 Total BUSCO groups searched

External Links