Repository: https://pub.amphibase.org/draft/Caudata/Pleurodeles_waltl/

2021_07 release: 25,735 sequences

Transcripts

  • Mean Tx length(bp): 2,841
  • Median Tx length(bp): 2,161
  • Tx longer than 400bp: 22,129 (85.988)
  • Tx longer than 1kbp: 18,065 (70.196)
  • Tx longer than 5kbp: 4,338
  • Tx longer than 10kbp: 570

Peptides

  • Mean peptide length(aa): 463
  • Median peptide length(aa): 326
  • Peptides longer than 100aa: 22,369 (86.921)
  • Peptides longer than 500aa: 8,036 (31.226)
  • Peptides longer than 1000aa: 2,437
  • Peptides longer than 3000aa: 136

BUSCO

  • Vertebrates: C:95.5%[S:92.4%,D:3.1%],F:2.2%,M:2.3%,n:3354
    • 3202 Complete BUSCOs (C)
    • 3099 Complete and single-copy BUSCOs (S)
    • 103 Complete and duplicated BUSCOs (D)
    • 74 Fragmented BUSCOs (F)
    • 78 Missing BUSCOs (M)
    • 3354 Total BUSCO groups searched

External Links