Repository: https://pub.amphibase.org/draft/Caudata/Salamandra_algira/

2021_07 release: 8592 sequences

Transcripts

  • Mean Tx length(bp): 1,491
  • Median Tx length(bp): 1,207
  • Tx longer than 400bp: 7,504 (87.337)
  • Tx longer than 1kbp: 5,049 (58.764)
  • Tx longer than 5kbp: 132
  • Tx longer than 10kbp: 4

Peptides

  • Mean peptide length(aa): 303
  • Median peptide length(aa): 244
  • Peptides longer than 100aa: 7,545 (87.814)
  • Peptides longer than 500aa: 1,236 (14.385)
  • Peptides longer than 1000aa: 140
  • Peptides longer than 3000aa: 0

BUSCO

  • Vertebrates: C:35.2%[S:34.1%,D:1.1%],F:13.0%,M:51.8%,n:3354
    • 1183 Complete BUSCOs (C)
    • 1145 Complete and single-copy BUSCOs (S)
    • 38 Complete and duplicated BUSCOs (D)
    • 437 Fragmented BUSCOs (F)
    • 1734 Missing BUSCOs (M)
    • 3354 Total BUSCO groups searched

External Links