Repository: https://pub.amphibase.org/draft/Caudata/Salamandra_atra/

2021_07 release: 10,122 sequences

Transcripts

  • Mean Tx length(bp): 1,703
  • Median Tx length(bp): 1,327
  • Tx longer than 400bp: 8,963 (88.550)
  • Tx longer than 1kbp: 6,294 (62.181)
  • Tx longer than 5kbp: 340
  • Tx longer than 10kbp: 20

Peptides

  • Mean peptide length(aa): 345
  • Median peptide length(aa): 271
  • Peptides longer than 100aa: 9,082 (89.725)
  • Peptides longer than 500aa: 1,947 (19.235)
  • Peptides longer than 1000aa: 308
  • Peptides longer than 3000aa: 3

BUSCO

  • Vertebrates: C:42.4%[S:41.1%,D:1.3%],F:13.2%,M:44.4%,n:3354
    • 1424 Complete BUSCOs (C)
    • 1380 Complete and single-copy BUSCOs (S)
    • 44 Complete and duplicated BUSCOs (D)
    • 444 Fragmented BUSCOs (F)
    • 1486 Missing BUSCOs (M)
    • 3354 Total BUSCO groups searched

External Links