Repository: https://pub.amphibase.org/draft/Gymnophiona/Caecilia_tentaculata/

2021_07 release: 22,226 sequences

Transcripts

  • Number of transcripts: 22226
  • Mean length(bp): 2,428
  • Median length(bp): 1,915
  • Tx longer than 400bp: 20,449 (92.005)
  • Tx longer than 1kbp: 16,054 (72.231)
  • Tx longer than 5kbp: 2,339
  • Tx longer than 10kbp: 177

Peptides

  • Mean length(aa): 443
  • Median length(aa): 326
  • Peptides longer than 100aa: 20,927 (94.155)
  • Peptides longer than 500aa: 6,633 (29.843)
  • Peptides longer than 1000aa: 1,792
  • Peptides longer than 3000aa: 43

BUSCO5

  • Vertebrates: C:90.7%[S:87.5%,D:3.2%],F:4.5%,M:4.8%,n:3354
    • 3041 Complete BUSCOs (C)
    • 2935 Complete and single-copy BUSCOs (S)
    • 106 Complete and duplicated BUSCOs (D)
    • 151 Fragmented BUSCOs (F)
    • 162 Missing BUSCOs (M)
    • 3354 Total BUSCO groups searched

External Links