Repository: https://pub.amphibase.org/draft/Gymnophiona/Microcaecilia_dermatophaga/

2021_07 release: 18,336 sequences

Transcripts

  • Number of transcripts: 18,336
  • Mean Tx length(bp): 2,085
  • Median Tx length(bp): 1,653
  • Tx longer than 400bp: 15,993 (87.222)
  • Tx longer than 1kbp: 12,442 (67.856)
  • Tx longer than 5kbp: 1,258
  • Tx longer than 10kbp: 81

Peptides

  • Mean pep length(aa): 403
  • Median pep length(aa): 302
  • Peptides longer than 100aa: 16,013 (87.331)
  • Peptides longer than 500aa: 4,849 (26.445)
  • Peptides longer than 1000aa: 1,138
  • Peptides longer than 3000aa: 22

BUSCO

  • Vertebrates: C:76.1%[S:73.1%,D:3.0%],F:9.1%,M:14.8%,n:3354
    • 2551 Complete BUSCOs (C)
    • 2452 Complete and single-copy BUSCOs (S)
    • 99 Complete and duplicated BUSCOs (D)
    • 306 Fragmented BUSCOs (F)
    • 497 Missing BUSCOs (M)
    • 3354 Total BUSCO groups searched

External Links