Repository: https://pub.amphibase.org/draft/Gymnophiona/Rhinatrema_bivittatum/

2021_07 release: 24,143 sequences

Transcripts

  • Mean Tx length(bp): 2,076
  • Median Tx length(bp): 1,602
  • Tx longer than 400bp: 20,944 (86.750)
  • Tx longer than 1kbp: 16,086 (66.628)
  • Tx longer than 5kbp: 1,719
  • Tx longer than 10kbp: 121

Peptides

  • Mean pep length(aa): 423
  • Median pep length(aa): 308
  • Peptides longer than 100aa: 21,005 (87.002)
  • Peptides longer than 500aa: 6,800 (28.166)
  • Peptides longer than 1000aa: 1,793
  • Peptides longer than 3000aa: 55

BUSCO

  • Vertebrates: C:91.6%[S:88.3%,D:3.3%],F:3.5%,M:4.9%,n:3354
    • 3072 Complete BUSCOs (C)
    • 2961 Complete and single-copy BUSCOs (S)
    • 111 Complete and duplicated BUSCOs (D)
    • 119 Fragmented BUSCOs (F)
    • 163 Missing BUSCOs (M)
    • 3354 Total BUSCO groups searched

External Links