Repository: https://pub.amphibase.org/draft/Gymnophiona/Typhlonectes_compressicauda/

2021_07 release: 20,948 sequences

Transcripts

  • Mean tx length(bp):
  • Mean Tx length(bp): 1,857
  • Median Tx length(bp): 1,429
  • Tx longer than 400bp: 17,669 (84.347)
  • Tx longer than 1kbp: 13,177 (62.903)
  • Tx longer than 5kbp: 1,102
  • Tx longer than 10kbp: 55

Peptides

  • Mean pep length(aa): 376
  • Median pep length(aa): 276
  • Peptides longer than 100aa: 17,861 (85.264)
  • Peptides longer than 500aa: 5,023 (23.978)
  • Peptides longer than 1000aa: 1,156
  • Peptides longer than 3000aa: 9

BUSCO

  • Vertebrates: C:76.0%[S:73.1%,D:2.9%],F:9.8%,M:14.2%,n:3354
    • 2548 Complete BUSCOs (C)
    • 2452 Complete and single-copy BUSCOs (S)
    • 96 Complete and duplicated BUSCOs (D)
    • 329 Fragmented BUSCOs (F)
    • 477 Missing BUSCOs (M)
    • 3354 Total BUSCO groups searched

External Links